Personal Chair
- 51cg
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- Email Address
- r.ebel@abdn.ac.uk
- Telephone Number
- +44 (0)1224 272930
- Office Address
- School/Department
- School of Natural and Computing Sciences
Internal Memberships
Safety Adviser for the Chemistry Department, Member of the University Health & Safety Committee
Latest Publications
2-((((R)-3-(((9E,17Z)-18-Bromooctadeca-9,17-dien-7,15-diynoyl)oxy)-2-hydroxypropoxy)(hydroxy)phosphoryl)oxy)-N,N,N-trimethylethan-1-aminium
MolBank, vol. 2026, no. 3, M2188Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
An Exploratory LC-HRMS Metabolomics Study of Culture Medium-Dependent Metabolic Variation and Bioactivity in Ten Fungal Strains
International Journal of Molecular Sciences, vol. 27, no. 9, 3866Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
New Compounds from the Deep-sea Sponge Mycale lingua
Chemistry & Biodiversity, vol. 23, no. 2, e03519Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Deep-Sea Marine Metabolites as Promising Anti-Tubercular Agents: CADD-Guided Targeting of the F420-Dependent Oxidoreductase
Marine Drugs, vol. 24, no. 2, 58Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
Virtual screening of azoles libraries: the search for potential anti-mucormycotic agents using computational tools
Network Modeling Analysis in Health Informatics and Bioinformatics, vol. 14, no. 1, 23Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- Research
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Research Overview
Biologically Active Natural Products
- Structure elucidation of biologically active marine and terrestrial-derived natural products with the aid of modern spectroscopic methods, including one- and two-dimensional NMR spectroscopy and various mass spectrometric techniques.
- Characterisation of natural products with regard to biological activity in pharmacologically relevant assay systems.
An endophytic fungus is a fungus that spends the whole or part of its life cycle colonizing inside the healthy tissue of the host plant, typically without causing any apparent symptoms of disease, but forming a relationship between latent phytopathogenesis to mutualistic symbiosis.
Endophytic fungi associated with plants represent a potential new source of novel chemistry and biology to assist in solving not only human, but also animal and plant health problems.
Current research of our group explores endophytes isolated from different medicinal plants and mangroves for pharmacologically active natural products which might prove to be suitable for specific medicinal or agrochemical applications. By the use of advanced cultivation and investigation procedures as well as chemical technology, novel natural product leads will be optimized on the basis of their biological activities to yield effective chemotherapeutic and other bioactive agents.
- Marine microbiology, especially cultivation of marine fungi for analysis of secondary metabolite profiles.
The marine environment serves as a source not only of untapped taxonomical diversity of fungi, but also unique chemical structures of novel fungal metabolites. Marine fungi have been gaining increased attention in recent decades because of their potential as producers of biologically active secondary metabolites with therapeutic potential. Moreover, the exploration of fungi could also solve the problem of supply of marine-derived pharmacologically active substances, which normally are produced in a limited amount. Cephalosporine C is a first classical example of a b-lactam antibiotic isolated from a marine derived fungus (Cephalosporium acremonium).
- Molecular taxonomy of marine-derived fungi as well as endophytic fungi
Isolation of endophytic or endosymbiontic fungi is limited by the phenomenon that more than 99.8 % of micro-organisms existing in nature are not amenable to currently available cultivation methods. Molecular biology techniques can be used to overcome these limitations. Fungi strains may be identified by total DNA isolation, amplification of the so-called ITS region, sequencing of the product and database search. Â Complex samples consisting of multiple fungi will result in a mixture of amplification products that cannot be sequenced together. Separation, traditionally performed by cloning, nowadays can be achieved by denaturing gradient gel electrophoresis that separates PCR products by their sequence-based melting behaviour.
- Structure elucidation of biologically active marine and terrestrial-derived natural products with the aid of modern spectroscopic methods, including one- and two-dimensional NMR spectroscopy and various mass spectrometric techniques.
- Teaching
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Programmes
- Undergraduate, 4 year, September start
- Undergraduate, 5 year, September start
Teaching Responsibilities
Professor Ebel teaches in the following courses:
- CM1020 Chemistry for the Life Sciences 1
- CM1021 Chemistry for the Physical Sciences 1
- CM1022 Elements of Chemistry 1CM1512 Chemistry for the Life Sciences 2
- CM1522 Elements Of Chemistry 2
- CM2016 Analytical Chemistry and Spectroscopy
- CM2514 Organic and Biological Chemistry
- CM3534 Organic and Biological Chemistry
- CM4537 Advanced Honours Chemistry, module "Natural Products"
- CM4538 Integrated Chemistry
- CM5003 MChem Chemistry Applications
- Publications
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LC-HRMS-Database Screening Metrics for Rapid Prioritization of Samples to Accelerate the Discovery of Structurally New Natural Products
Journal of Natural Products, vol. 82, no. 2, pp. 211-220Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Natural product diversity of actinobacteria in the Atacama Desert
Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, vol. 111, no. 8, pp. 1467-1477Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
Asenjonamides A-C, antibacterial metabolites isolated from Streptomyces asenjonii strain KNN 42.f from an extreme-hyper arid Atacama Desert soil
The Journal of antibiotics, vol. 71, pp. 425-431Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Zebrafish-Based Discovery of Antiseizure Compounds from the Red Sea: Pseurotin A2 and Azaspirofuran A
ACS Chemical Neuroscience, vol. 9, no. 7, pp. 1652-1662Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Does Osmotic Stress Affect Natural Product Expression in Fungi?
Marine Drugs, vol. 15, no. 8, 254Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
Dual Induction of New Microbial Secondary Metabolites by Fungal Bacterial Co-cultivation
Frontiers in Microbiology, vol. 8, pp. 1-10Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Targeted Dereplication of Microbial Natural Products by High-Resolution MS and Predicted LC Retention Time
Journal of Natural Products, vol. 80, no. 5, pp. 1370-1377Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Pseudochelin A, a siderophore of Pseudoalteromonas piscicida S2040
Tetrahedron, vol. 73, no. 18, pp. 2633-2637Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
Isolation and anti-HIV-1 integrase activity of lentzeosides A-F from extremotolerant lentzea sp. H45, a strain isolated from a high-altitude Atacama Desert soil
The Journal of antibiotics, vol. 70, pp. 448-453Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Spongionella Secondary Metabolites, Promising Modulators of Immune Response through CD147 Receptor Modulation
Frontiers in Immunology, vol. 7, 452Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Identification of Spongionella compounds as cyclosporine A mimics
Pharmacological Research, vol. 107, pp. 407-414Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
NMR characterisation of natural products derived from under-explored microorganisms
Nuclear Magnetic Resonance. Ramesh, V. (ed.). Royal Society of Chemistry, pp. 240-268, 29 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI:
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Solamargine production by a fungal endophyte of Solanum nigrum
Journal of Applied Microbiology, vol. 120, no. 4, pp. 900-911Contributions to Journals: Articles- [ONLINE] DOI:
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A Comparative biochemical study on two marine endophytes bacterium SRCnm and bacillus sp. JS, isolated from red sea algae
Pakistan Journal of Pharmaceutical Sciences, vol. 29, no. 1, pp. 17-26Contributions to Journals: Articles- [ONLINE]
Biosynthesis of Neocarazostatin A Reveals the Sequential Carbazole Prenylation and Hydroxylation in the Tailoring Steps
Chemistry & Biology, vol. 22, no. 12, pp. 1633-1642Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Discovery of a Single Monooxygenase that Catalyzes Carbamate Formation and Ring Contraction in the Biosynthesis of the Legonmycins
Angewandte Chemie International Edition, vol. 54, no. 43, pp. 12697-12701Contributions to Journals: Articles- [ONLINE] DOI:
Chaxapeptin, a Lasso Peptide from Extremotolerant Streptomyces leeuwenhoekii Strain C58 from the Hyperarid Atacama Desert
Journal of Organic Chemistry, vol. 80, no. 20, pp. 10252-10260Contributions to Journals: Articles- [ONLINE] DOI:
Spongionella Secondary Metabolites Regulate Store Operated Calcium Entry Modulating Mitochondrial Functioning in SH-SY5Y Neuroblastoma Cells
Cellular Physiology and Biochemistry, vol. 37, no. 2, pp. 779-792Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Gracilins: Spongionella-derived promising compounds for Alzheimer disease
Neuropharmacology, vol. 93, pp. 285-293Contributions to Journals: Articles- [ONLINE] DOI:
Bromoalkaloids Protect Primary Cortical Neurons from Induced Oxidative Stress
ACS Chemical Neuroscience, vol. 6, no. 2, pp. 331-338Contributions to Journals: Articles- [ONLINE] DOI:
Diversity of organic structures of marine microbial origin with drug potential
Phycotoxins: Chemistry and Biochemistry. Botana, L., Alfonso, A. (eds.). 2 edition. Blackwell Science, pp. 361-380, 20 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI:
Legonaridin, a new member of linaridin RiPP from a Ghanaian Streptomyces Isolate
Organic & Biomolecular Chemistry, vol. 13, no. 37, pp. 9585-9592Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
New rocaglamide derivatives from Vietnamese Aglaia species
Natural Product Communications, vol. 9, no. 6, pp. 833-834Contributions to Journals: Articles- [ONLINE]
Decorosides A and B, cytotoxic flavonoid glycosides from the leaves of Rhododendron decorum
Natural Product Communications, vol. 9, no. 4, pp. 473-476Contributions to Journals: Articles- [ONLINE]
Dermacozines H-J Isolated from a Deep-Sea Strain of Dermacoccus abyssi from Mariana Trench Sediments
Journal of Natural Products, vol. 77, no. 2, pp. 416-420Contributions to Journals: Articles- [ONLINE] DOI:
Hymenoscyphus pseudoalbidus and Hymenoscyphus albidus: Viridiol concentration and virulence do not correlate
Forest Pathology, vol. 44, no. 1, pp. 39-44Contributions to Journals: Articles- [ONLINE] DOI:
- [ONLINE]
Spongionella secondary metabolites protect mitochondrial function in cortical neurons against oxidative stress
Marine Drugs, vol. 12, no. 2, pp. 700-718Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Mitigation of ROS Insults by Streptomyces Secondary Metabolites in Primary Cortical Neurons
ACS Chemical Neuroscience, vol. 5, no. 1, pp. 71-80Contributions to Journals: Articles- [ONLINE] DOI:
Induction of diverse secondary metabolites in Aspergillus fumigatus by microbial co-culture
RSC Advances, vol. 34, no. 3, pp. 14444-14450Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
Comprehensive analysis of lipophilic arsenic species in a brown alga (Saccharina latissima)
Analytical Chemistry, vol. 85, no. 5, pp. 2817-2824Contributions to Journals: Articles- [ONLINE] DOI:
- [ONLINE]
Natural products from marine-derived fungi
Marine Fungi and Fungal-like Organisms. Jones, E. B. G., Hyde, K. D., Pang, K. (eds.). de Gruyter, pp. 411-440, 30 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI:
- [ONLINE]
Pullularins E and F, two new peptides from the endophytic fungus Bionectria ochroleuca isolated from the mangrove plant Sonneratia caseolaris
Marine Drugs, vol. 10, no. 5, pp. 1081-1091Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
Diverse Metabolic Profiles of a Streptomyces Strain Isolated from a Hyper-arid Environment
Journal of Natural Products, vol. 74, no. 9, pp. 1965-1971Contributions to Journals: Articles- [ONLINE] DOI:
Chaxamycins A-D, Bioactive Ansamycins from a Hyper-arid Desert Streptomyces sp
Journal of Natural Products, vol. 74, no. 6, pp. 1491-1499Contributions to Journals: Articles- [ONLINE] DOI:
Ophiobolin sesterterpenoids and pyrrolidine alkaloids from the sponge-derived fungus Aspergillus ustus
Helvetica Chimica Acta, vol. 94, no. 4, pp. 623-631Contributions to Journals: Articles- [ONLINE] DOI:
- [ONLINE]
Isolation, characterization, and bioactivity of endophytic fungi of Tylophora indica
World Journal of Microbiology and Biotechnology, vol. 27, no. 3, pp. 571-577Contributions to Journals: Articles- [ONLINE] DOI:
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Antimicrobial activities of marine fungi from Malaysia
Botanica Marina, vol. 53, no. 6, pp. 507-513Contributions to Journals: Articles- [ONLINE] DOI:
- [OPEN ACCESS]
- [ONLINE]
Terpenes from marine-derived fungi
Marine Drugs, vol. 8, no. 8, pp. 2340-2368Contributions to Journals: Literature Reviews- [ONLINE] DOI:
- [OPEN ACCESS]
Callyaerins A-F and H, new cytotoxic cyclic peptides from the Indonesian marine sponge Callyspongia aerizusa
Bioorganic & Medicinal Chemistry, vol. 18, no. 14, pp. 4947-4956Contributions to Journals: Articles- [ONLINE] DOI:
- [ONLINE]
Natural product diversity from marine fungi
Comprehensive Natural Products II: Chemistry and Biology. Elsevier Ltd, pp. 223-262, 40 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI:
- [ONLINE]
Dermacozines, a new phenazine family from deep-sea dermacocci isolated from a Mariana Trench sediment
Organic & Biomolecular Chemistry, vol. 8, no. 10, pp. 2352-2362Contributions to Journals: Articles- [ONLINE] DOI:
Bioactive Diterpene Derivatives from the Marine Sponge Spongionella sp.
Journal of Natural Products, vol. 72, no. 8, pp. 1471-1476Contributions to Journals: Articles- [ONLINE] DOI:
A new tetrahydrofuran derivative from the Endophytic Fungus Chaetomium sp. isolated from Otanthus maritimus
Zeitschrift für Naturforschung - C, vol. 64, no. 5-6, pp. 350-354Contributions to Journals: Articles- [ONLINE]
Bioactive metabolites from the endophytic fungus Stemphylium globuliferum isolated from Mentha pulegium
Journal of Natural Products, vol. 72, no. 4, pp. 626-631Contributions to Journals: Articles- [ONLINE] DOI:
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Enniatins A1, B and B1 from an endophytic strain of Fusarium tricinctum induce apoptotic cell death in H4IIE hepatoma cells accompanied by inhibition of ERK phosphorylation
Molecular Nutrition & Food Research, vol. 53, no. 4, pp. 431-440Contributions to Journals: Articles- [ONLINE] DOI:
Bioactive secondary metabolites from the endophytic fungus Chaetomium sp isolated from Salvia officinalis growing in Morocco
Biotechnologie Agronomie Societe et Environnement, vol. 13, no. 2, pp. 229-234Contributions to Journals: Articles- [OPEN ACCESS]
Chemical constituents of the endophytic fungus Lecythophora sp. isolated from Alyxia reinwardtii
Natural Product Communications, vol. 4, no. 11, pp. 1485-1488Contributions to Journals: Articles- [ONLINE]
Drimane sesquiterpenoids from the fungus Aspergillus ustus isolated from the marine sponge Suberites domuncula
Journal of Natural Products, vol. 72, no. 9, pp. 1585-1588Contributions to Journals: Articles- [ONLINE] DOI:
- [ONLINE]
Xanalteric acids I and II and related phenolic compounds from an endophytic Alternaria sp. isolated from the Mangrove plant Sonneratia alba
Journal of Natural Products, vol. 72, no. 11, pp. 2053-2057Contributions to Journals: Articles- [ONLINE] DOI:
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New Purine Derivatives from the Marine Sponge Petrosia nigricans
Natural Product Communications, vol. 3, no. 11, pp. 1889-1894Contributions to Journals: Articles- [ONLINE] DOI: