51cg

People

Dr Alessandro De Moura

Dr Alessandro De Moura
Dr Alessandro De Moura
Dr Alessandro De Moura

Reader

51cg
Email Address
a.moura@abdn.ac.uk
Telephone Number
+44 (0)1224 272505
School/Department
School of Natural and Computing Sciences

Biography

Lecturer in Physics. Dr de Moura holds a PhD in Physics from Universidade Estadual de Campinas, Brazil.

Dr Moura has a background in dynamical systems and statistical physics. His research interests in these areas include transient chaos, nonhyperbolic chaotic scattering, and chaotic advection of flows. Since moving to Aberdeen, he has been applying physics and mathematics to understand fundamental biological processes, in collaborations with biologists in Aberdeen and elsewhere. Biological problems he is actively working on include: mathematical modelling of DNA replication, dynamics and regulation of protein synthesis in uni-cellular organisms, modelling the responses of pathogenic fungi species to combinations of stresses, homeostasis of bacteria, macromolecular dynamics in cellular membranes.

Publications

Page 1 of 4 Results 1 to 25 of 76

  • Mathematical model for the distribution of DNA replication origins

    de Moura, A., Karschau, J.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 110, no. 3, 034408
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

    Fernandes, L. D., Moura, A. P., Ciandrini, L.
    Scientific Reports, vol. 7, 17409
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]
    • [OPEN ACCESS]
    • [ONLINE]

  • Cooperative response and clustering: Consequences of membrane-mediated interactions among mechanosensitive channels

    Fernandes, L. D., Guseva, K., De Moura, A. P.
    Physical Review E, vol. 96, no. 2, 022410
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]
    • [ONLINE]

  • Frontiers of chaotic advection

    Aref, H., Blake, J. R., Budišić, M., Cardoso, S. S., Cartwright, J. H., Clercx, H. J., El Omari, K., Feudel, U., Golestanian, R., Gouillart, E., Van Heijst, G. F., Krasnopolskaya, T. S., Le Guer, Y., MacKay, R. S., Meleshko, V. V., Metcalfe, G., Mezić, I., De Moura, A. P., Piro, O., Speetjens, M. F., Sturman, R., Thiffeault, J. L., Tuval, I.
    Reviews of Modern Physics, vol. 89, no. 2, 025007
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [ONLINE]

  • Brief isoflurane anaesthesia affects differential gene expression, gene ontology and gene networks in rat brain

    Lowes, D. A., Galley, H. F., Moura, A. P. S., Webster, N. R.
    Behavioural Brain Research, vol. 317, pp. 453-460
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach

    Delgado-SanMartin, J. A., Hare, J. I., de Moura, A. P. S., Yates, J. W. T., Wang, E. (ed.)
    PLoS Computational Biology , vol. 11, no. 10, e1004550
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]
    • [ONLINE]

  • Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

    Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P., Romano, M. C.
    PloS ONE, vol. 10, no. 9, 0137750
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Diffusion in randomly perturbed dissipative dynamics

    Rodrigues, C. S., Chechkin, A. V., Moura, A. P. S. d., Grebogi, C., Klages, R.
    Europhysics Letters, vol. 108, no. 4, 40002
    Contributions to Journals: Articles
    • [ONLINE] DOI:

  • Strange eigenmodes and chaotic advection in open fluid flows

    De Moura, A. P. S.
    Europhysics Letters, vol. 106, no. 3, 34002
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [ONLINE]

  • The dynamics of genome replication using deep sequencing

    Müller, C. A., Hawkins, M., Retkute, R., Malla, S., Wilson, R., Blythe, M. J., Nakato, R., Komata, M., Shirahige, K., de Moura, A. P. S., Nieduszynski, C. A.
    Nucleic Acids Research, vol. 42, no. 1, e3
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Dynamical Collapse of Trajectories Part I: Homoclinic Tangles in Systems with Dry Friction

    Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N., Nijmeijer, H.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
    • [ONLINE]
    • [ONLINE]

  • Dynamical Collapse of Trajectories Part II: Limit Set of a Horseshoe-like Map

    Biemond, J. J. B., Moura, A. P., Grebogi, C., van de Wouw, N., Nijmeijer, H.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
    • [ONLINE]
    • [ONLINE]

  • The role of asymmetries in rock-paper-scissors biodiversity models

    Timpanaro, A. M., Grebogi, C., de Moura, A. P. S.
    XXXVI Encontro Nacional de Física da Matéria Condensada
    Contributions to Conferences: Abstracts
    • [ONLINE]
    • [ONLINE]

  • High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination

    Hawkins, M., Retkute, R., Müller, C. A., Saner, N., Tanaka, T. U., de Moura, A. P. S., Nieduszynski, C. A.
    Cell Reports, vol. 5, no. 4, pp. 1132-1141
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Stochastic association of neighboring replicons creates replication factories in budding yeast

    Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S., Tanaka, T. U.
    Journal of Cell Biology, vol. 202, no. 7, pp. 1001-1012
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Integrated stress response of Escherichia coli to methylglyoxal: transcriptional readthrough from the nemRA operon enhances protection through increased expression of glyoxalase I

    Ozyamak, E., de Almeida, C., de Moura, A. P. S., Miller, S., Booth, I. R.
    Molecular Microbiology, vol. 88, no. 5, pp. 936-950
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Effects of bounded random perturbations on discrete dynamical systems

    Rodrigues, C. S., de Moura, A. P. S., Grebogi, C.
    Bounded noises in physics, biology and engineering. d'Onofrio, A. (ed.). Birkhäuser, pp. 151-168, 17 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters
    • [ONLINE] DOI:

  • Combinatorial stresses kill pathogenic Candida species

    Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E., Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K., Brown, A. J. P.
    Medical Mycology, vol. 50, no. 7, pp. 699-709
    Contributions to Journals: Articles
    • [ONLINE] DOI:

  • Impact of combinatorial stresses upon Candida albicans

    Kaloriti, D., Tillmann, A., Jacobsen, M., Yin, Z., Patterson, M., Radmaneshfar, E., You, T., Chandrasekaran, K., Pang, W., Coghill, G., de Moura, A. P. S., Thiel, M., Romano, M. C., Grebogi, C., Haynes, K., Quinn, J., Gow, N. A. R., Brown, A. J. P.
    Mycoses, vol. 55, no. Suppl. 4, pp. 15
    Contributions to Journals: Abstracts
    • [ONLINE] DOI:
    • [ONLINE]

  • A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

    You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J., Brown, A. J. P.
    BMC Research Notes, vol. 5, 258
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Dynamical collapse of trajectories

    Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N., Nijmeijer, H.
    Europhysics Letters, vol. 98, no. 2, 20001
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [ONLINE]

  • Are the fractal skeletons the explanation for the narrowing of arteries due to cell trapping in a disturbed blood flow?

    Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N., Grebogi, C.
    Computers in Biology and Medicine, vol. 42, no. 3, pp. 276-281
    Contributions to Journals: Articles
    • [ONLINE] DOI:

  • Optimal placement of origins for DNA replication

    Karschau, J., Blow, J. J., de Moura, A. P. S.
    Physical Review Letters, vol. 108, no. 5, 058101
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Optimality in DNA repair

    Richard, M. C., Fryett, M., Miller, S., Booth, I., Grebogi, C., Moura, A.
    Journal of Theoretical Biology, vol. 292, pp. 39-43
    Contributions to Journals: Articles
    • [ONLINE] DOI:
    • [OPEN ACCESS]

  • Mixing and Chaos in Open Flows

    de Moura, A. P. S., Feudel, U., Gouillart, E.
    Advances in Applied Mechanics. van der Giessen, E., Aref, H., Clercx, H., Speetjens, M. (eds.). Elsevier, pp. 1-50, 50 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters
    • [ONLINE] DOI:
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