Differential transcriptomic responses in carp cell lines following activation of antiviral immune responses by poly I:C
Smeaton, L., Paley, R., Cejas, I. C., Holland, J. W., Martin, S. A.
Comparative immunology reports, vol. 11, 200297
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Development and characterization of nanobodies specific for Atlantic salmon serum albumin and apolipoprotein A-I as future half-life extenders of biologics in salmonids
Dovgan, T., Dharadhar, S., Di Maggio, A., Xenaki, K., Fjelldal, P. G., Stead, D., Wargelius, A., van Bergen en Henegouwen, P., Martin, S., Oliveira, S., Bogerd, J.
Aquaculture, vol. 625, 744294
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Isotope-specific fractionation corrections improve doubly labelled water estimates of energy expenditure in mice
Krol, E., Speakman, J. R.
Journal of Comparative Physiology. B, Biochemical, Systemic, and Environmental Physiology
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Metabarcoding Reveals Soil Fungal Diversity Shifts in the Artificial Cloud Forest and Volcanic Desert of Ascension Island
Grammatiki, K., de Jonge, N., Hargreaves, J., Cleary, M., Marčiulynienė, D., Kytinou, E., Peters, A. F., Freitag, T. E., van West, P., Kuepper, F., Woodward, S.
Fungal Ecology, vol. 84, 101542
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Characterisation and differential expression of Atlantic salmon, Salmo salar, corticosteroid receptor paralogues following poly I:C and Vibrio anguillarum stimulations
Hunter, L. E., Naseer, S., Monaghan, S. J., Ellison, A., Martin, S. A., Holland, J. W.
Developmental and Comparative Immunology, vol. 180, 105651
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Characterisation of eicosanoid-regulating genes in Atlantic salmon: insights into the control of pro-inflammatory and anti-inflammatory lipid mediators
Abushweka, A. A., Naseer, S., Holland, J., Lorgen-Ritchie, M., Martin, S.
Fish & Shellfish Immunology, vol. 173, 111296
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Genetic transformation of the microalgal parasite Paraphysoderma sedebokerense enables direct visualization of its pathogenic interaction with Haematococcus pluvialis
Tian, W., van West, P., Zhao, S., Wen, X., Wang, Z., Li, Y., Ding, Y.
Algal Research, vol. 96, 104730
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Gene editing without a genome: generation of F0 CRISPR mutants in gastropod mollusc Crepidula fornicata
Jordan, D. C., Rivers, M. L., Belmont, L., Martin, S. A., Bean, T. P., Sleight, V. A.
Rediscovery of the rare Cladochroa chnoosporiformis Skottsberg from the Falkland Islands and its merger with Utriculidium durvillei Skottsberg
Mystikou, A., Asensi, A. O., Peters, A. F., Kytinou, E., Amin, S. A., Brickle, P., van West, P., Kuepper, F.
Botanica Marina, vol. 69, no. 1-2, pp. 35-46
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Effects of duration of a plant-based diet stimulus at first feeding on nutritional programming in Atlantic salmon (Salmo salar)
Gong, X., Sprague, M., McMillan, S., Gómez-Requeni, P., Norambuena, F., Martin, S. A., Tocher, D. R., Betancor, M. B.
Fish Physiology and Biochemistry, vol. 52, no. 2, 33
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SlotLim: Catch advice for data-limited vertebrate and invertebrate fisheries managed by harvest slot limits
Pritchard, C. J., Salama, N. K., Berrill, I., Martin, S. A., Hale, E., Marshall, C. T.
Ecological Solutions and Evidence, vol. 7, no. 1, e70164
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Defining Conservation Units in a Highly Diverse Species: A Case on Arctic Charr
Fenton, S., Bean, C. W., Martin, S. A., Poultney, S. J., Smith, A., de Eyto, E., Elmer, K. R., Adams, C. E.
Evolutionary Applications, vol. 19, no. 1, e70190
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Gene gain and loss drive the diversification of gig immune genes in teleosts: structural and regulatory insights from Atlantic salmon
Manousi, D., Naseer, S., Martin, S., Sandve, S., Saitou, M.
Fish & Shellfish Immunology, vol. 168, 110975
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Fish Cytokines at the Crossroads: From Ancient Immune Signals to Modern One Health and Aquaculture Vaccines
Sahoo, A. K., Mohanty, B. P., Martin, S., Savan, R., Otta, S. K.
Journal of Interferon and Cytokine Research
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Dissecting the genetic basis of response to salmonid alphavirus in Atlantic salmon
Manousi, D., Jaskula, D. M., Grammes, F., Knutsen, T. M., Naseer, S., Martin, S. A., Moen, T., Saitou, M., Lien, S.
BMC Genomics, vol. 26, no. 1, 657
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Immune cell-resolved transcriptomics provides insights into the basis for variations of fish genetic resistance to viral disease
Clark, T. C., Thomas, V., Taylor, R. S., Charles, M., Laurent, A., Schwartz-Cornil, I., Collet, B., Lallias, D., Macqueen, D. J., Martin, S. A. M., Boudinot, P.
BMC Biology, vol. 23, no. 1, 348
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Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
Naseer, S., Clark, T. C., Collet, B., Dewari, P., Baranasic, D., Macqueen, D. J., Boudinot, P., Martin, S. A. M.
Genome Research
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Characterisation of post-translational and transcriptional reprogramming of the immune response to ISAV and IPNV infections in salmon head kidney cells
Stewart, R. D., Guitián, X. S., Gervais, O., Jin, Y., Salisbury, S. J., Ballantyne, M., Martin, S. A. M., Orosa-Puente, B., Robledo, D.
Frontiers in Immunology, vol. 16, 1532917
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Cell death is a conserved innate disease response of brown algae against the oomycete Eurychasma dicksonii
Gachon, C. M. M., Müller, D. G., Strittmatter, M., Murua Andrade, P. F., Beckmann, M. J., Tsirigoti, A., Wawra, S., Katsaros, C. I., van West, P., Kuepper, F.
iScience, vol. 28, no. 9, 113195
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Preliminary Investigation Into the Appropriateness of Control Measures and Harvest Control Rules for a Data‐Limited, Sex‐Changing Fish Managed by Harvest Slot Limits
Pritchard, C. J., Treasurer, J., Highway, A., Salama, N., Berrill, I., Martin, S., Marshall, C. T.
Aquaculture, Fish and Fisheries, vol. 5, no. 4, e70091
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Fish Disease Diagnosis Methods: Assessment and Possible Applications
Kumar, V., Das, B. K., Martin, S. A.
Laboratory Techniques for Fish Disease Diagnosis. Das, B. K., Kumar, V. (eds.). Springer Science+Business Media, pp. 175-200, 26 pages
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Microbial and histopathological insights into gill health of Atlantic salmon ( Salmo salar ) across Scottish aquaculture sites
Costelloe, E. P., Lorgen-Ritchie, M., Krol, E., Noguera, P., Bickerdike, R., Tinsley, J., Valdenegro, V., Douglas, A., Martin, S. A.
Aquaculture, vol. 599, 742166
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Investigating the relative vulnerability of a temperate coastal fish community to a live wrasse pot fishery
Pritchard, C. J., Salama, N. K., Berrill, I., Martin, S. A., Marshall, C. T.
Fisheries Research, vol. 284, 107327
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Aligning fishing gear selectivity with harvest slot limits for ballan wrasse Labrus bergylta
Pritchard, C., Stendal, M. M. .. R., Halvorsen, K. T., Stewart, L., Salama, N., Berrill, I., Martin, S. A. M., Marshall, C. T.
Aquaculture, Fish and Fisheries, vol. 5, no. 1, e70044
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Omics approaches in fish nutrition research
Martin, S., Porter, D., Mente, E., Casu, F., Watson, A.
Feed and Feeding for Fish and Shellfish: Nutritional Management. Kumar, V. (ed.). Academic Press, pp. 639-668, 30 pages
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Association of microbial community structure with gill disease in marine-stage farmed Atlantic salmon (Salmo salar);: a yearlong study
Clinton, M., Wyness, A. J., Martin, S. A., Brierley, A. S., Ferrier, D. E.
BMC Veterinary Research, vol. 20, 340
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Saprolegnia parasitica
Apostolakis, K., Secombes, C. J., van West, P.
Fish Parasites: A Handbook of Protocols for their Isolation, Culture and Transmission. CABI International, pp. 390-401, 12 pages
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Diseases of marine fish and shellfish in an age of rapid climate change
Rowley, A. f., Baker-Austin, C., Boerlage, A. s., Caillon, C., Davies, C. e., Duperret, L., Martin, S. a., Mitta, G., Pernet, F., Pratoomyot, J., Shields, J. d., Shinn, A. p., Songsungthong, W., Srijuntongsiri, G., Sritunyalucksana, K., Vidal-Dupiol, J., Uren webster, T. m., Taengchaiyaphum, S., Wongwaradechkul, R., Coates, C. j.
iScience, vol. 27, no. 9, 110838
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Dynamics of Gill Responses to a Natural Infection with Neoparamoeba perurans in Farmed Tasmanian Atlantic Salmon
Vallarino, M. C., Dagen, S. L., Costelloe, E., Oyenekan, S. I., Tinsley, J., Valdenegro, V., Król, E., Noguera, P., Martin, S. A. M.
Animals, vol. 14, no. 16, 2356
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Modulation of metabolic and immunoregulatory pathways in the gut transcriptome of Atlantic Salmon (Salmo salar L.) after early nutritional programming during first feeding with plant-based diet
Tawfik, M., Betancor, M. B., McMillan, S., Norambuena, F., Tocher, D., Douglas, A., Martin, S.
Frontiers in Immunology, vol. 15, 1412821
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Impact of freshwater rearing history on Atlantic salmon gill response to viral stimulation post seawater transfer
Lorgen-Ritchie, M., Chalmers, L., Clarkson, M., Taylor, J. F., MacKenzie, S., Migaud, H., Martin, S.
Fish and Shellfish Immunology, vol. 150, 109653
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Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages
Tawfik, M. M., Lorgen-Ritchie, M., Krol, E., McMillan, S., Norambuena, F., Bolnick, D. I., Douglas, A., Tocher, D. R., Betancor, M. B., Martin, S.
Animal Microbiome, vol. 6, 38
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Evaluation of the efficacy of MONTANIDE™ GR01, a new adjuvant for feed-based vaccines, on the immune response and protection against Streptococcus agalactiae in oral vaccinated Nile tilapia (Oreochromis niloticus) under laboratory and on-farm conditions
Pholchamat, S., Vialle, R., Luang-In, V., Phadee, P., Wang, B., Wang, T., Secombes, C. J., Wangkahart, E.
Fish & Shellfish Immunology, vol. 149, 109567
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Macroalgal eukaryotic microbiome composition indicates novel phylogenetic diversity and broad host spectrum of oomycete pathogens
Timanikova, N., Fletcher, K., Han, J., van West, P., Woodward, S., Kim, G., Kuepper, F., Wenzel, M.
Can nutritional programming in Atlantic salmon (Salmo salar) be optimised with a reduced stimulus period?
McMillan, S., Martin, S. A., Król, E., Norambuena, F., Baumgärtner, S., Gong, X., Tawfik, M. M., Glencross, B., Taylor, J. F., Tocher, D. R., Betancor, M. B.
Aquaculture, vol. 585, 740686
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Mapping the cellular landscape of Atlantic salmon head kidney by single cell and single nucleus transcriptomics
Andresen, A. M. S., Taylor, R. S., Grimholt, U., Daniels, R. R., Sun, J., Dobie, R., Henderson, N. C., Martin, S. A. M., Macqueen, D. J., Fosse, J. H.
Fish & Shellfish Immunology, vol. 146, 109357
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Cell atlas of the Atlantic salmon spleen reveals immune cell heterogeneity and cell-specific responses to bacterial infection
Sun, J., Ruiz Daniels, R., Balic, A., Andresen, A. M. S., Bjørgen, H., Dobie, R., Henderson, N. C., Koppang, E. O., Martin, S. A. M., Fosse, J. H., Taylor, R. S., Macqueen, D. J.
Fish & Shellfish Immunology, vol. 145, pp. 109358
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Specific Phylotypes of Saprolegnia parasitica Associated with Atlantic Salmon Freshwater Aquaculture
Shreves, K., Saraiva, M., Ruba, T., Miller, C., Scott, M., McLaggan, D., van West, P.
Journal of Fungi, vol. 10, no. 1, 57
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Advancements, deficiencies, and future necessities of studying Saprolegniales: A semi-quantitative review of 1073 published papers
Masigol, H., van West, P., Taheri, S. R., Fregeneda-Grandes, J. M., Pârvulescu, L., McLaggan, D., Bliss, T. T., Mostowfizadeh-Ghalamfarsa, R., Pourmoghaddam, M. J., Grossart, H. P.
Fungal Biology Reviews, vol. 46, 100319
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Time is a stronger predictor of microbiome community composition than tissue in external mucosal surfaces of Atlantic salmon (Salmo salar) reared in a semi-natural freshwater environment
Lorgen-Ritchie, M., Chalmers, L., Clarkson, M., Taylor, J. F., Migaud, H., Martin, S. A.
Aquaculture, vol. 566, 739211
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Phylogeny and expression of tetraspanin CD9 paralogues in rainbow trout (Oncorhynchus mykiss)
Dehler, C. E., Boudinot, P., Collet, B., Martin, S. A.
Developmental and Comparative Immunology, vol. 146, 104735
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Catch of the Day: New Serum Amyloid A (SAA) Antibody Is a Valuable Tool to Study Fish Health in Salmonids
Buks, R., Alnabulsi, A., Zindrili, R., Alnabulsi, A., Wang, A., Wang, T., Martin, S. A.
Cells, vol. 12, no. 16, 2097
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Conserved and divergent arms of the antiviral response in the duplicated genomes of salmonid fishes
Clark, T., Naseer, S., Gundappa, M. K., Laurent, A., Perquis, A., Collet, B., Macqueen, D. J., Martin, S. A., Boudinot, P.
Genomics, vol. 115, no. 4, 110663
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A Summer Heat Wave Reduced Activity, Heart Rate, and Autumn Body Mass in a Cold-Adapted Ungulate
Trondrud, L. M., Pigeon, G., Król, E., Albon, S., Ropstad, E., Kumpula, J., Evans, A. L., Speakman, J. R., Loe, L. E.
Physiological and Biochemical Zoology, vol. 96, no. 4, pp. 247-320
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Microbiomes in the context of developing sustainable intensified aquaculture
Lorgen-Ritchie, M., Uren Webster, T., McMurtrie, J., Bass, D., Tyler, C. R., Rowley, A., Martin, S. A. M.
Frontiers in Microbiology, vol. 14, 1200997
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Deciphering the Immunostimulatory Effects of β-Glucan on a Rainbow Trout (Oncorhynchus mykiss) Macrophage-like Cell Line (RTS11) by Whole Transcriptome Analysis: Genes
Porter, D., Naseer, S., Peggs, D., McGurk, C., Martin, S. A.
Genes, vol. 14, no. 6, 1261
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Novel insights into the cytokine network of rainbow trout Oncorhynchus mykiss using cell lines and primary leukocyte populations
Liu, F., Dixon, B., Del Mar Ortega-Villaizan, M., Tafalla, C., Xu, H., Secombes, C. J., Wang, T.
Fish & Shellfish Immunology, vol. 137, 108755
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Diseases and disorders in fish due to harmful algal blooms
Shahmohamadloo, R. S., Frenken, T., Rudman, S. M., van West, P., Ibelings, B. W., Trainer, V. L.
Climate Change on Diseases and Disorders of Finfish in Cage Culture. Woo, P. T. K., Subasinghe, R. P. (eds.). 3 edition. CABI International, pp. 387-429, 43 pages
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Fur removal promotes an earlier expression of involution-related genes in mammary gland of lactating mice
Krol, E., Turner, F., Derous, D., Mitchell, S. E., Martin, S., Douglas, A., Speakman, J.
Journal of Comparative Physiology. B, Biochemical, Systemic, and Environmental Physiology, pp. 171-192
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The molecular dialog between oomycete effectors and their plant and animal hosts
Saraiva, M., Ściślak, M. E., Ascurra, Y. T., Ferrando, T. M., Zic, N., Henard, C., van West, P., Trusch, F., Vleeshouwers, V. G.